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Bioinformatics Sequence Analysis Tools

Below listed are few online Sequence Analysis tools. We regularly add new websites and new tools in Bioinformatics. If you come accross new tools in bioinformatics, please let us know.

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Sequence Analysis tools Online


Protein Sequence Analysis Tools
3DCrunch - Database Browser of modeled Swiss-Prot proteins at ExPASy, Switzerland 3D-Jigsaw - Comparative modeling server AAT - Analysis and Annotation Tool for finding genes in genomic sequences ASC - Analytic Surface Calculation of PDB molecules @t EMBL, Heidelberg) BLOCKS Search - Search a protein against BLOCKS database BTPRED - Prediction of beta-turns CD-Search - Search a protein against CDD domain database Chime - Plugin for structure view Cn3D - Plugin for structure view for structure @ NCBI eMOTIF Search - Assign putative function to new proteins by sequence comparison with IDENTIFY motif database. Coils - Prediction of coiled Coil regions by Lupas method CPHmodels - Structure prediction by comparative homology modeling DIP - Search Database of Interacting Proteins DOMPLOT - Structural domain organization annotated by ligand contacts. eMATRIX Search - Predict function by sequence analysis using minimal-risk scoring matrices. eMOTIF Maker - Generate motifs describing protein families or superfamilies FingerPRINTScan - Search a protein sequence against protein motif fingerprints database HMMTOP - Prediction of transmembrane helices and topology of proteins JPred - Protein secondary structure prediction LIBRA - LIght Balance for Remote Analogous proteins: search compatible structure of a target sequence by threading Comparative modeling tools Modules - Mobile protein domains database MolSurfer - Calculate and navigate protein-protein interfaces NetOGlyc - Prediction of O-glycosylation sites in mammalian proteins nnPredict - Protein secondary structure prediction. PFSCAN - Protein search against different profile databases PPSearch - Search a protein sequence against prosite pattern database Predicting Protein 3D structure based on homologous sequence search RasMol - 3D viewer VAST - Structure-structure similarity search WebMol - 3D viewer


DNA / RNA Sequence Analysis Tools
Gene Finder -Exon and Splice Site Prediction GENEID -Prediction of Exons and Gene Structure ORD ID - Open Reading Frame search ORF Finder - Open Reading Frame Finder PatScan - DNA Sequence Motif search




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